Potential methane production and oxidation along the soil chronosequence of the Rotmoos glacier forefield

Eva Maria Prem; Nadine Praeg; Katrin Hofmann; Andreas Otto Wagner; Paul Illmer

Journal & Issue Details

Die Bodenkultur: Journal of Land Management, Food and Environment

Journal Details

Format: Journal
eISSN: 2719-5430
First Published: 30 Mar 2016
Publication timeframe: 4 times per year
Languages: English

Glaciers in the Alps have been retreating since the end of the Little Ice Age in 1850s. As a consequence, differently developed soils of the same bedrock and under same current climate conditions are in immediate proximity and can be used for pedogenesis studies (Tscherko et al., 2004; Nicol et al., 2005; Göransson et al., 2011). In the first colonization step, chemolithotrophic, chemoorganotrophic, and phototrophic microorganisms (Hodkinson et al., 2003; Mapelli et al., 2011; Zumsteg et al., 2012) as well as organic material and invertebrates (Hodkinson et al., 2002) are deposited on the raw/rocky surface, showing that heterotrophic microorganisms colonize recently exposed rocks before autotrophic ones (Tscherko et al., 2003; Bardgett et al., 2007). It can take decades or even centuries before plants can grow on these soils depending on temperature, moisture, and energy supply (Hodkinson et al., 2002). The microbial community structure and the metabolic strategies change steadily but directionally with soil age—from rather unstable but highly reproductive r-strategists to more stable and efficient k-strategists (Garland et al., 2001; Sigler et al., 2002). Besides, the microbial community structure at glacier forelands depends on the age and recalcitrance of the organic material (Bardgett et al., 2007). Enzyme activities are important parameters for describing the metabolic potentials of these microbial communities along the chronosequence (Sigler et al., 2002). In this context, previous studies have shown that enzyme activities per gram of dry weight (DW) tend to increase with soil age (Ulrich et al., 2010; Brankatschk et al., 2011; Hofmann et al., 2013; Zeng et al., 2015).

The chronosequence in the Rotmoos valley is an ideal habitat to also portray the succession of microorganisms engaged in the methane cycle. Methanogenic archaea and methanotrophic microorganisms are responsible for the biological production and oxidation of the greenhouse gas methane, respectively (Le Mer and Roger, 2001). Methanogenic archaea, obligate anaerobes, are able to inhabit aerobic soils (Küsel et al., 1999; Bomberg et al., 2010; Angel et al., 2011; Prem et al., 2014; Hofmann et al., 2016; Praeg et al., 2017; Mutschlechner et al., 2018). Within soils, methanogens presumably survive in anoxic micro niches (Peters and Conrad, 1995). However, some studies also indicate that methanogens can tolerate certain amounts of oxygen and thus survive oxic periods within the soil (Bomberg et al., 2010). For a long time, it was believed that methane can only be oxidized in aerobic environments such as upland soils or landfills (Knief et al., 2003; Bohn et al., 2011) or anaerobically in the presence of sulfate in marine environments (Boetius et al., 2000; Orphan et al., 2002; Hinrichs and Boetius, 2003). Recent studies showed that anaerobic oxidation of methane (AOM) can also take place in anaerobic habitats such as peatlands, deep lake sediments, freshwater wetlands, or waste water treatment plants by anaerobic methanotrophic (ANME) archaea or denitrifying anaerobic methane-oxidizing (DAMO) microorganisms (Raghoebarsing et al., 2006; Zhu et al., 2015; Wang et al., 2017). AOM can be linked to a variety of biochemical systems such as the freshwater sulfur cycle (Segarra et al., 2015), electron acceptors such as iron (Sivan et al., 2011) or nitrate (Raghoebarsing et al., 2006; Wang et al., 2017), or to electron shuttles such as humic acids (Blodau and Deppe, 2012).

To our knowledge, only few studies focused on the microbial activity and especially on the activity of methanogens and methanotrophs in underdeveloped soils such as glacier forefields or sub-glacial habitats (Wadham et al., 2008; Bárcena et al., 2010, 2011; Stibal et al., 2012; Hofmann et al., 2013; Chiri et al., 2015). For example, recently exposed soils in Greenland were anoxic because of meltwater and showed an in situ methane release. However, the diversity of methanotrophic microbial communities and the potential CH⁴ oxidation increased with soil age; and 80- to 150-year-old soils were shown to take up methane (Bárcena et al., 2010, 2011). In previous batch experiments, it was shown that soils from the Rotmoos glacier foreland can produce and oxidize methane under certain conditions, thus showing that methanogens and methanotrophs can be present and active at these sites. However, soil age alone could not explain the alterations in potential methane production and oxidation (Hofmann et al., 2013). Compared with the descriptive investigation of Hofmann et al. (2013), we used five soils of different age for an experimental approach. We investigated the effect of different incubation temperatures and water regimens on the potential methane production and oxidation. As NH₄⁺ content can have a significant influence on methanogenic archaea and methanotrophic species (Aronson et al., 2012; Prem et al., 2014), a further aim of this study was to investigate the effect of NH₄⁺ addition on the methane cycle.

2

Materials and methods

2.1

Experimental site and soil sampling

The study site is located near Obergurgl in the Tyrolean Oetz Valley (Austria) on the glacier forefield of the Rotmoosferner (46°50′N, 11°30′ E) at a sea level of 2,280–2,450 m (Kaufmann, 2001). In 2012, the average annual temperature was 2.5°C, the sum precipitation was 1,001 mm in Obergurgl at a sea level of 1,942 m (ZAMG, Zentralanstalt für Meteorologie und Geodynamik, Austria). The parental material mainly consists of paragneis and mica schist (Schwienbacher and Koch, 2010). Further information on climate conditions, bedrock properties, and early succession can be looked up elsewhere (Kaufmann, 2001; Schwienbacher and Koch, 2010; Hofmann et al., 2013). Soil samples aged approximately 6 (S1), 35 (S1A), 80 (S2), 150 (S2A), and >5,000 (S3) years (Hofmann et al., 2013) were taken along the chronosequence in autumn 2012. The sampling location S1 is situated at the margin of the glacier, S1A and S2 are situated along the moraine, S2A is situated at the end of the moraine (year 1858), and S3 is situated outside the glacier. S3 is ice free for >5,000 years. As the main objective of this study was to experimentally test specific soil modifications along the chronosequence (see Section 2.5), 10 samples were taken in close proximity (about 10 m) for each site (S1–S3) and pooled to 1 sample for each site (5 samples in total; volume of each sample is about 2 L). Each sample was sieved to pass 2-mm mesh and stored at 4°C until further analyses. The samples were stored in plastic bags that enabled gas exchange (aerobic conditions) but kept the water loss to a minimum. Owing to the lack of well-developed soil horizons, the samples of soil S1–S2A were taken just beneath the soil ground surface (−6 to −1 cm). The samples of soil S3 were taken beneath the root horizon.

2.2

Experimental design

Soils of five different ages along a chronosequence of the Rotmoosferner were used for the investigation. All chemical and enzyme analyses of the soils were performed subsequently after sampling and carried out at least in triplicate. For the assessment of the potential methane production (PoMP) and potential methane oxidation (PoMO), soil samples with varying treatments were prepared as described in Section 2.5. Thus, there were eight treatments including two temperatures (10°C and 37°C), two water contents (water saturation and natural water content), and two ammonium concentrations (ammonium added, natural ammonium content). For each variant, twice-autoclaved soil samples were also included and treated equally (negative controls). The headspace samples were gas-chromatographically measured after an incubation period of 28 days. This 4-week incubation period was considered to be sufficient for the growth and activity of microorganisms engaged in the methane cycle, as proven in previous studies (e.g., Wagner et al., 2010). Negative controls were subtracted from the results.

2.3

Chemical analyses

All following methods of chemical analyses were performed according to standard protocols described elsewhere (Schinner et al., 1996). DW was determined after the samples were dried at 105°C overnight (approximately 16 h). SOM content was assessed in dried samples that were incinerated at 430°C for 5 h. A temperature of 430°C was used to avoid gaseous losses of CO² out of carbonates. Soil pH was determined electrochemically in a 0.01 M CaCl₂ solution (mixing ratio, 1:12.5). For the measurement of the plant-available ammonium content, 7.5 g of soil was mixed with 30 mL of a 2M KCl extraction solution. The extracts were filtered and 1:2 diluted with distilled water (except for soils S1) and measured spectrophotometrically in a solution containing NaOH, nitroprusside and dichloroisocyanuric acid sodium salt at a wavelength of 660 nm (see Section 2.6). Ammonium chloride was used as standard. For the measurement of the nitrate content, 7.5 g of soil was mixed with 30 mL of a 2M KCl extraction solution. The filtered extracts of soil S1 were 1:10 diluted with distilled water; all other extracts were 1:20 diluted. The 10 mL of the diluted extract was mixed with 0.4 mL of sulfuric acid (96%, 1:10 diluted) and measured at 210 nm via ultraviolet absorption (see Section 2.6). Potassium nitrate was used as standard. For the blank samples, nitrate was reduced with copper-plated zinc granules.

2.4

Enzyme analyses

All following methods of enzyme analyses were performed according to standard protocols described elsewhere (Schinner et al., 1996): Activities of dehydrogenase (DH) were determined by incubating 2.5 g of each soil sample with 2.5 mL of triphenyltetrazolium chloride (TTC) in the dark for 16 h. Blank samples were incubated with 0.1M Tris buffer. The produced triphenylformazan (TPF) was extracted with 12.5 mL of acetone for 2 h. After filtration, the extracts were 1:2 diluted and measured colorimetrically at 546 nm within 1 h (see Section 2.6). For the determination of the ammonification (AM) activity, 5 g of each soil was saturated with 15 mL of distilled water for 7 days. Blank samples were stored at −20°C. After 7 days, 15 mL of a 2M KCl extraction solution was added for 30 min. The filtered extracts were 1:2 (S1, blank samples) and 1:10 (S1A–S3) diluted with distilled water. The ammonium released was measured as described earlier. For dimethylsulfoxide (DMSO) analysis, 5 g of each soil sample was incubated with 1.25 mL of DMSO in gas-tight flasks at 30°C for 4 h. The produced dimethylsulfide (DMS), gaseous at room temperature, was subsequently measured using gas chromatography (see Section 2.6).

2.5

PoMP and PoMO analyses

For the assessment of PoMP and PoMO, 10 g of soil sample (fresh weight) was filled in each sterile serum flask. Besides soil samples with natural ammonium content, soil samples with an ammonium addition of 3.5 g NH⁺₄-N L⁻¹ soil solution, based on the results of Lins and Illmer (2012), were also included in the assessment. For that purpose, ammonium chloride (in powder form) was directly added to the soil samples. To simulate snow melt in spring, not only soil samples of in situ moisture but also soil samples under water-saturated conditions were included (addition of sterile, distilled water: 1.2 mL for S1, 2.0 mL for S1A, 3.3 mL for S2, 4.1 mL for S2A, and 4.5 mL for S3). The samples were incubated at 10°C and 37°C in order to promote psychrophilic and mesophilic microorganisms, respectively. For the assessment of PoMP, the open flasks were evacuated and flushed with sterile N₂/CO₂ (70:30) gas for several times. After the last flushing step, the flasks were sealed with sterile rubber stoppers to ensure gas tightness throughout the experiment. For the assessment of PoMO, the infusion flasks were sealed under aerobic conditions and 1% of the headspace was replaced by methane using a syringe and cannula. A concentration of 1% CH ₄ was chosen because of previous research approaches at this study site (Hofmann et al., 2013). Methane concentration in the headspace was measured at the beginning of the experiment and after an incubation period of 4 weeks.

2.6

Analytical instruments

The pH measurements were conducted with a pH meter and a glass electrode. All colorimetric measurements were carried out using a Hitachi U-2001 Spectrophotometer. For DMS analyses, a Shimadzu GC-2010 gas chromatograph was used (Wagner et al., 2012); the oven and injector temperature was set to 100°C and the flame ionization detector (FID) temperature to 130°C. Helium gas was used as mobile phase. For methane detection, a Shimadzu GC-2010 Plus gas chromatograph was used as described earlier (Hofmann et al., 2016). The oven temperature was set to 140°C, the injector temperature to 160°C, and the FID temperature to 180°C. Nitrogen gas was used as mobile phase, and hydrogen and compressed air for the FID.

2.7

Statistical analyses

Graphical presentations (box plots) and statistical analyses were performed with Statistica 9 (StatSoft®). Normal probability plots with standardized residuals were performed for each parameter. The Shapiro–Wilk W test was used to check normal distribution within each group. The Levene test was used to check for homogeneity of variance. The results of DH activity, pH, NH⁺₄-N content, and NO^-₃-N content were used for one-way ANOVA (p < 0.05), including Bonferroni post-hoc tests (B-test). The results of DW, SOM, DMSO reduction, AM, and PoMO were further processed with the Mann–Whitney (M-W) U test (p < 0.05) and Kruskal–Wallis (K-W) one-way ANOVA (p < 0.05), including multiple comparisons of mean ranks for all groups by computing p-values with two-sided significance levels and with a Bonferroni adjustment.

3

Results

3.1

Chemical analyses

All chemical and enzymatic parameters (per gram of DW), including the respective statistical analyses, are given in Table 1. The results of the enzymatic properties per gram of DW as well as per gram of SOM are also presented in Figure 1. SOM content ranged from 0.99% (± 0.054) in S1, the youngest soil, to 11.09% (± 0.311) in S3, the oldest soil. The plant-available ammonium content was also highest in the oldest soil (S3) and reached a value of 9.72 (± 0.134) μg NH⁺₄-N g⁻¹ DW. NO₃-N content, on the other hand, was highest in S2A (38.80 (± 2.658) NO^-₃-N g⁻¹ DW) and was significantly different (B-test: p < 0.01, n = 3) from younger (S1–S2) and older soils (S3). Slightly acidic conditions were measured in S3: pH 5.5 (± 0.04). Soils younger than S3 showed a pH of around 7, ranging from 7.1 (± 0.04) in S1 to 6.8 (± 0.02) in S2A.

Enzyme activities (activities of dehydrogenase, ammonification, and DMSO reduction) along the chronosequence (n = 3). Data were standardized $d (z = \frac{x-μ}{σ}) .$ $\text{d}\left( \text{z =}\frac{\text{x- }\!\!\mu\!\!\text{ }}{\sigma } \right).$(a) Enzyme parameters calculated per gram of DW, (b) enzyme parameters calculated per gram of SOM. Boxes represent means ± standard error and markers mean values.
Abbildung 1. Enzymatische Parameter (Dehydrogenaseaktivität, Ammonifikation und DMSO Reduktion) entlang der Chronosequenz (n = 3). Die Daten wurden standardisiert $(z = \frac{x-μ}{σ}) .$ $\left( \text{z}\,\text{=}\frac{\text{x- }\!\!\mu\!\!\text{ }}{\sigma } \right).$A) Enzymatische Daten, bezogen auf 1 g Trockengewicht (DW), B) enzymatische Daten, bezogen auf 1 g organische Substanz (SOM). Die Boxen repräsentieren den jeweiligen Mittelwert ± Standardfehler, die Marker geben Mittelwerte an.

Table 1

Chemical and enzymatic properties (n = 3) of the soil S1, S1A, S2, S2A, and S3 presented in mean (x̅) with the respective standard deviation (SD). Letters in brackets show significant differences between the soil samples (p < 0.05, one-way ANOVA and Bonferroni post-hoc test for pH, NH⁺₄ content, and NO^-₃ content, and dehydrogenase activity; and Kruskal–Wallis one-way ANOVA with multiple comparisons of mean ranks and Bonferroni adjustment for DW, SOM, ammonification activity, and DMSO reduction).

Tabelle 1. Chemische und enzymatische Parameter (n = 3) der Böden S1, S1A, S2, S2A und S3, als Mittelwert (x̅) mit Standardabweichung (SD) dargestellt. Die Buchstaben in Klammern geben Informationen über signifikante Unterschiede zwischen den Böden (p < 0.05, One-way ANOVA mit Bonferroni post-hoc Tests für den pH-Wert, Ammonium- und Nitratgehalt und für die Dehydrogenaseaktivität und Kruskal-Wallis One-way ANOVA mit multiple Mittelwertvergleiche und Bonferroni Korrektur für das Trockengewicht, den Gehalt an organischer Substanz, für die Ammonifikation und DMSO- Reduktion).

Soil		DW (%)	SOM (%)	pH	Ammonium $\begin{matrix} (μ {g NH}_{4}^{+} - N g^{- 1} \\ DW) \end{matrix}$ $\begin{align} & (\mu \text{g NH}_{4}^{+}-\text{N}\ {{\text{g}}^{-1}} \\ & \ \ \ \ \ \ \text{DW)} \\ \end{align}$	Nitrate $\begin{matrix} (μ {g NO}_{3} - N g^{- 1} \\ DW) \end{matrix}$ $\begin{align} & (\mu \text{g N}{{\text{O}}_{3}}-\text{N}\ {{\text{g}}^{-1}} \\ & \ \ \ \ \ \ \text{DW)} \\ \end{align}$	Dehydrogenase $(μ g TPF g^{- 1} DW h^{- 1})$ $\left( \mu \text{g TPF}\ {{\text{g}}^{-1}}\text{DW}\,{{\text{h}}^{-1}} \right)$activity	Ammonification activity $\begin{matrix} (μg {NH}_{4}^{+} -N g^{- 1} \\ DW d^{- 1}) \end{matrix}$ $\begin{align} & (\text{ }\!\!\mu\!\!\text{ g}\ \text{NH}_{4}^{+}\text{-N}\ {{\text{g}}^{-1}} \\ & \ \ \ \ \text{DW}\ {{\text{d}}^{-1}}) \\ \end{align}$	DMSO reduction $\begin{matrix} (μg {DMS g}^{- 1} \\ DW h^{- 1}) \end{matrix}$ $\begin{align} & (\text{ }\!\!\mu\!\!\text{ g}\ \text{DMS }{{\text{g}}^{-1}} \\ & \ \ \ \ \text{DW}\ {{\text{h}}^{-1}}) \\ \end{align}$
S1	x̅	93.8 (a)	0.99 (a)	7.1 (d)	2.30 (a)	4.97 (a)	0.90 (a)	0.75 (a)	0.47 (a)
(6 years)	SD	±0.02	±0.054	±0.04	±0.070	±0.107	±0.247	±0.307	±0.020
S 1A	x̅	90.1 (ab)	1.71 (ab)	7.0 (c)	2.46 (a)	18.80 (b)	2.34 (b)	4.57 (ab)	2.31 (a)
(35 years)	SD	±0.13	±0.089	±0.04	±0.108	±2.120	±0.374	±0.662	±0.230
S2	x̅	84.2 (ab)	4.98 (ab)	6.9 (b)	3.98 (b)	29.00 (c)	8.90 (d)	7.83 (ab)	6.50 (a)
(80 years)	SD	±0.05	±0.170	±0.02	±0.258	±1.393	±0.231	±3.177	±0.424
S2A	x̅	81.3 (ab)	5.83 (ab)	6.8 (b)	4.06 (b)	38.80 (d)	6.10 (c)	5.15 (ab)	5.81 (a)
(150 years)	SD	±0.25	±0.019	±0.02	±0.266	±2.658	±0.449	±1.624	±0.448
S3	x̅	75.0 (b)	11.09 (b)	5.5 (a)	9.72 (c)	22.47 (b)	8.00 (d)	12.00 (b)	8.22 (a)
(>5000 years)	SD	±0.42	±0.311	±0.04	±0.134	±1.497	±0.309	±0.968	±2.780

3.2

Enzyme analyses

The AM activity increased with soil age, ranging from 0.75 (± 0.307) μg NH⁺₄-N g⁻¹ DW d⁻¹ in soil S1 to 12.00 (± 0.968) μg NH⁺₄-N g⁻¹ DW d⁻¹ in soil S3; however, the enzymatic parameter did not increase steadily because there was a slight but statistically not significant decrease in soil S2A compared with soil S2. A slight (but not significant) break in at soil S2A (middle-aged soil) could further be observed when analyzing the DMSO reduction, which ranged from 0.47 (± 0.02) μg DMS g⁻¹ DW h⁻¹ in soil S1 to 8.22 (± 2.780) μg DMS g⁻¹ DW h⁻¹ in soil S3. The DH activity significantly increased from soil S1A to S2 (B-test: p < 0.01, n = 3) and reached a value of 8.90 (± 0.231) μg TPF g⁻¹ DW h⁻¹. Similar to the previous activity parameters, a decrease could be observed from soil S2 to S2A but the decrease in DH activity was significant (B-test: p < 0.01, n = 3; 6.10 (± 0.449) μg TPF g⁻¹ DW h⁻¹). The oldest soil (S3) only showed the second highest value (8.00 [± 0.309] μg TPF g⁻¹ DW h⁻¹).

3.3

PoMP and PoMO analyses

Samples showed a considerable methane production only at 37°C under water-saturated conditions. With the addition of NH⁺₄, S2A (middle-+aged soil) showed a PoMP of up to 90.1 μL CH₄ g⁻¹ DW 28 d⁻¹, followed by S2 with a PoMP of up to 52.7 and S1A with a PoMP of up to 3.9 μL CH₄ g⁻¹ DW 28 d⁻¹. Under natural NH⁺₄ concentrations, a PoMP of up +to 13.1 μL CH₄ g⁻¹ DW 28 d⁻¹ could be observed in S2. The youngest (S1) and oldest (S3) soil showed no PoMP at all (Figure 2). When summarizing the data, however, it becomes apparent that the values between the parallel flasks differ distinctly (S2A, with NH⁺₄ addition: 30.7 ± 51.4; S2, with NH⁺₄ addition: 17.8 ± 30.3; S2, no NH⁺₄ addition: 4.5 ± 7.4; S1A, with NH⁺₄ addition: 1.3 ± 2.3 μL CH₄ g⁻¹ DW 28 d⁻¹). Owing to these high differences between the parallels and few methane production results, further parametric and non-parametric statistical analyses are not appropriate for the PoMP results, although the differences in PoMP were quite obvious.

PoMP data of soil S1–S3 under water-saturated conditions, with ammonium added (aa) or with a natural ammonium content (na) at 10°C and 37°C (n = 6). Boxes represent mean values ± standard error, black squares represent means, and circles represent outliers.
Abbildung 2. PoMP Daten für Boden S1 bis S3 unter wassergesättigten Verhältnissen, mit Ammoniumzugabe (aa) oder unter natürlichem Ammoniumgehalt (na) bei 10°C und 37°C (n = 6). Die Boxen repräsentieren den jeweiligen Mittelwert ± Standardfehler, die schwarzen Quadrate geben Mittelwerte, die Kreise Ausreißer an.

The highest PoMO values could be observed in the oldest soil (S3) at 10°C and under natural NH⁺₄ content: under water-saturated conditions, a mean PoMO of −18.6 ± 0.12 μL CH₄ g⁻¹ DW 28 d⁻¹ was measured; under natural water conditions, a mean PoMO of −10.2 ± 0.44 μL CH₄ g⁻¹ DW 28 d⁻¹ could be observed (Figure 3). At 37°C, under water-saturated and natural NH⁺₄ content conditions, soil S3 showed a PoMP of −6.3 ± 0.44 μL CH₄ g⁻¹ DW 28 d⁻¹. Soil age had a highly significant influence on

PoMO data of soil S1–S3with a natural ammonium content under water-saturated (ws) or natural water content (nw) conditions at 10°C and 37°C (n = 6). Boxes represent mean values ± standard error, black squares represent means, and circles represent outliers.
Abbildung 3. PoMO Daten für Boden S1-S3 unter natürlichem Ammoniumgehalt und unter wassergesättigten Verhältnissen (ws) bzw. bei natürlichem Wassergehalt (nw) bei 10°C und 37°C (n = 6). Die Boxen repräsentieren den jeweiligen Mittelwert ± Standardfehler, die schwarzen Quadrate geben Mittelwerte, die Kreise Ausreißer an.

PoMO (K-W: p < 0.01, n = 24), meaning that the oldest soil (S3) is significantly different from all other soils. The incubation temperature also had a significant influence on the methane oxidation (M-W: two-sided p < 0.05, n = 60), meaning that PoMO was basically higher at 10°C than at 37°C. Overall, the influence of the NH⁺₄ content was not significant (n = 60); however, when considering only the results at 37°C and under natural water conditions, the influence was apparent (K-W: p < 0.01, n = 15). When only looking at S3 but otherwise considering all incubation conditions, the effect of the NH⁺₄ content was also highly significant (M-W, for S3: two-sided p < 0.01, n = 12). No significant influence could be found regarding the water content (n = 60), however, the water content had a significantly influence on the PoMO values at 37°C and when NH⁺₄ was added (K-W: p < 0.01, n = 15).

4

Discussion

Generally speaking, enzyme activities per gram of DW increased with soil age as shown in Figure 1A. Enzyme activities per gram of SOM, on the other hand, did not increase with soil age but reached its maximum in the 35 (S1A) and 80 (S2) years old soils as shown in Figure 1B. This indicates that the physiologically active, highly reproductive fraction of soil microorganisms (r-strategists) decreases in soils older than 80 years, possibly because of a more restricted supply of readily available nutrients; a higher evenness of species (Sigler et al., 2002); increasing influence of root exudates, plant litter, and root morphology (Berg and Smalla 2009); and a higher SOM content (Table 1) in general. This shift from r- to k-strategists probably occurs between soil aged 80 (S2) and 150 (S2A) years as a drop in microbial activity could be observed in soil S2A (Figure 1A). In addition, the nitrate content was highest in soil S2A (middle-aged soil) possibly because of a reduced nitrogen immobilization into microbial biomass (Table 1). However, the peak in nitrate content in S2A could have several other (combined) reasons such as an increased nitrate uptake by plants in soil S3 (oldest soil) and/or an overall increase in nitrification activity with soil age. As the nitrification activity was not assessed in this study, this remains to be speculative. At another glacier foreland site in the Austrian alps, it was shown that the percentage of recalcitrant carbon decreases with soil age, from 3- to 145-year-old soils showing that the first colonizers use a more ancient, recalcitrant carbon pool, whereas microbial communities in more developed (>50-year-old) soils use more easily available carbon compounds deriving from plants (Bardgett et al., 2007). These results are very interesting and, in general, not contradictory to the results at the Rotmoos glacier foreland because the highest enzyme activities per gram of SOM were found in the 35- and 80-year-old soils (Figure 1B). However, these previous findings are difficult to compare with our results because of various reasons. First, information on soils older than 145 years is missing. Second, the total SOM content of each soil is not mentioned. Third, the chemical composition of the SOM content of the Rotmoos site was not measured. Nonetheless, relating microbial activities to the respective SOM content could be an additional, fast, and cheap method to get a first overview of the (relative) metabolic situation of soils along a chronosequence.

Owing to the PoMP and PoMO results, this study confirms that methanogenic archaea and methanotrophic microorganisms, responsible for the biological methane production and oxidation, respectively, are present and active in the Rotmoos glacier forefield (Hofmann et al., 2013). The methanogens, although thriving in a rather cold environment, prefer mesophilic to psychrophilic conditions at this site, whereas methane oxidation was highest at 10°C. Previous studies showed that methanogens of the Rotmoos glacier forefield can be active even at 50°C, although rates were higher at 37°C (Hofmann et al., 2013). As one of the objectives was to assess the potential and, therefore, maximum methane production and oxidation, we chose a temperature of 37°C even though this seldom reflects in situ temperature conditions at the study site. However, the use of optimal (temperature) conditions and a standardized procedure allow the comparison of the results from soils with different soil characteristics—a strategy that has been accepted for other soil activity measurements for a long time (Schinner et al., 1996).

Soil S2 and S2A (middle-aged soils) provide more favorable conditions for methane production than soil S3 (oldest soil). Owing to the high turnover rates in soil S2 and S2A (Table 1), more molecules such as CO₂ + H₂, needed for biological methane production, are provided. The higher activity of aerobic microorganisms may also lead to more anoxic conditions. The neutral pH in S2 and S2A is more suitable for methanogenic archaea than the slightly acidic conditions in soil S3 (Angelidaki and Ahring, 1994; Angelidaki and Sanders, 2004). Furthermore, archaea, to which methanogens belong, are known to be able to survive extreme conditions (e.g., rapid temperature changes) that are more common in undeveloped soils; therefore, they might have an advantage over many bacteria in these habitats. This assumption is in accordance with previous studies at the site, which showed a significantly higher archaeal abundance in soil S2 (4 × 10⁷ gene copies per gram of dry soil) than in soil S1 (2 × 10⁵ gene copies per gram of dry soil) or S3 (7 × 10⁶ gene copies per gram of dry soil) (Hofmann et al., 2013). However, the big differences in PoMP between the parallels of soil S2 and S2A indicate an all or nothing principle and that methanogens are very heterogeneously distributed in the soil and thus need ecological micro niches to survive (Peters and Conrad, 1995; Timonen and Bomberg, 2009; Prem et al., 2014).

Choosing the appropriate NH⁺₄-N concentration for testing possible effects on methane production and oxidation was delicate because literature stated different inhibition levels especially for methanogens (Angelidaki and Ahring, 1993; Sung and Liu, 2003; Lins and Illmer, 2012). As the effect of ammonium on methanogens obviously depends on a variety of accompanying conditions (e.g., pH, acclimation pre-phase (Sung and Liu, 2003)) and as we wanted to see a clear physiological responds but not necessarily a complete inhibition, we chose an ammonium addition of 3.5 g of NH⁺₄-N per liter of soil water—corresponding to about 200–900 μg of NH⁺₄-N per gram of dry soil—which turned out to be just fine for our approach. This is based on previous fermenter sludge experiments including ammonium additions of up to 10.1 g of NH⁺₄-N L⁻¹ (Lins and Illmer, 2012). The ammonium addition had a significantly negative effect on PoMO in soil S3 (Figure 4). This was not statistically significant over all soils/variants as the effect of ammonium also depends on other (incubation) conditions. The negative effect of ammonium on methanotrophic species could also be shown in other studies (Cochran et al., 1995). Ammonium can be oxidized by the enzyme methane monooxygenase and can outcompete methane (Le Bodelier, 2011). The ability to oxidize ammonium and the sensitivity to ammonium, however, can vary depending on the respective methanotroph (Nyerges and Stein, 2009). On the other hand, the increased ammonium content in soil S2 and S2A (middle-aged soils) could have promoted PoMP (Figure 2) possibly because methanogens did not need to fix nitrogen themselves, used the easily available ammonium instead, and, therefore, saved energy for other processes (Leigh, 2000; Le Bodelier, 2011).

Potential methane oxidation of soil S3 with ammonium added (aa) and with natural ammonium content (na), including all water and temperature variants (n = 12). Boxes represent mean values ± standard error, black squares represent means, and whiskers represent mean values ± 1.96 * standard error. The Mann–Whitney U test (p < 0.05, continuity correction) was applied which showed a highly significant difference between the two ammonium variants (aa, na) for soil S3: two-sided p < 0.01, Z-adjusted = 3.67.
Abbildung 4. Potentielle Methanoxidation von Boden S3 bei Ammoniumzugabe (aa) bzw. unter natürlichem Ammoniumgehalt (na). Die Box-Plots beinhaltet alle Wasser- und Temperaturvarianten (n = 12). Die Boxen repräsentieren den jeweiligen Mittelwert ± Standardfehler, schwarze Quadrate geben die Mittelwerte, Whiskers geben die Mittelwerte ± 1.96 * Standardfehler an. Der Mann-Whitney U test (p < 0.05, Kontinuitätskorrektur) zeigt einen hochsignifikanten Unterschied zwischen den beiden Ammoniumvarianten (aa, na) für den Boden S3: p (zwei-seitig) < 0.01, Z angepasst = 3.67.

PoMP only occurred under water-saturated conditions, thus corresponding well with previous PoMP investigations (Praeg et al., 2014; Prem et al., 2014). Besides, a high water content has a positive influence on nutrient supply and a negative one on the redox potential (Høj et al., 2006). Even though our laboratory-scale PoMP measurements were not suitable to simulate in situ conditions, water saturation was proven to be an important factor for the investigated soils, especially when the snow cover starts to melt in spring and early summer. Solar radiation can, furthermore, lead to higher soil temperature levels at this time of the year.

Previous in situ net methane emission measurements in the Rotmoos valley (Koch et al., 2007) showed that a well-developed meadow soil next to S3 (oldest soil) also functioned as a methane sink at least during snow-free periods. Multiple linear regression analysis for all diurnal measurements at the meadow site (snow-free periods) showed that the water-filled pore space had a positive influence, whereas the temperature at a depth of 15 cm in soil had a negative influence on the methane oxidation, explaining 52% of the methane uptake (Koch et al., 2007). These results correspond with our laboratory-scale PoMO approach because PoMO in S3 was stronger under water-saturated than under natural conditions and was also higher at 10°C than at 37°C. Water-saturated conditions lead to a better nutrient availability, as already stated earlier, and also to a reduction in O₂ availability. It is not clear whether there is enough O₂ left in the liquid phase or methane oxidation occurs anaerobically. However, the role of AOM in upland soils is more or less unknown but possible because of previous discoveries in freshwater environments (Segarra et al., 2015; Zhu et al., 2015; Wang et al., 2017). AOM cannot be ruled out at the Rotmoos site because S3 does have a relatively high SOM pool (Table 1), harbors a variety of soil microorganisms (see enzyme activities per gram of DW vs. enzyme activities per gram of SOM), and is water saturated at least in spring. This remains to be studied more profoundly. However, water saturation had the opposite effect on the less-developed soils. In the PoMO approach, soil S1 and S2 even showed a methane production under water-saturated conditions (Figure 3). The effect of ammonium addition and water saturation on the microorganisms in younger soils (S1–S2A) is quite contrary to the effect on microorganisms in soil S3 (Figures 2 and 3). By including these incubation variations in the PoMP and PoMO approaches, the differences in (potential) methane production and oxidation of the soils along the chronosequence could even be promoted.

5

Conclusions

In conclusion, our abiotic and enzyme activity measurements showed that the middle-aged soils, S2 and S2A, provided better conditions (pH and nutrients) for PoMP than younger/older soils. Besides, the high turnover rates in these soils may have intensified anoxic conditions, making the habitat more suitable for methanogenic archaea. PoMO, on the other hand, could only be detected in the oldest soil and was, to our surprise, highest under water-saturated thus O₂ restricted conditions. Many abiotic and biotic factors can influence the abundance and activity of microorganisms engaged in the methane cycle, which has been confirmed by the present study. Several models predicted a volume loss of glacier ice of about 25–48% between 2010 and 2100 (Hock and Huss, 2015). This means that large areas of newly released raw soil could be colonized by methanogenic archaea and/or methanotrophs that could potentially release or consume methane. However, the interactive effects of the factors responsible for (net) methane production or oxidation are not thoroughly understood so far but are an important part to estimate the feedback of glacier retreat on further climate changes— thus more investigations are urgently needed.

Figures & Tables

Enzyme activities (activities of dehydrogenase, ammonification, and DMSO reduction) along the chronosequence (n = 3). Data were standardized d(z =x-μσ).$\text{d}\left( \text{z =}\frac{\text{x- }\!\!\mu\!\!\text{ }}{\sigma } \right).$(a) Enzyme parameters calculated per gram of DW, (b) enzyme parameters calculated per gram of SOM. Boxes represent means ± standard error and markers mean values.Abbildung 1. Enzymatische Parameter (Dehydrogenaseaktivität, Ammonifikation und DMSO Reduktion) entlang der Chronosequenz (n = 3). Die Daten wurden standardisiert (z =x-μσ).$\left( \text{z}\,\text{=}\frac{\text{x- }\!\!\mu\!\!\text{ }}{\sigma } \right).$A) Enzymatische Daten, bezogen auf 1 g Trockengewicht (DW), B) enzymatische Daten, bezogen auf 1 g organische Substanz (SOM). Die Boxen repräsentieren den jeweiligen Mittelwert ± Standardfehler, die Marker geben Mittelwerte an.

Chemical and enzymatic properties (n = 3) of the soil S1, S1A, S2, S2A, and S3 presented in mean (x̅) with the respective standard deviation (SD). Letters in brackets show significant differences between the soil samples (p < 0.05, one-way ANOVA and Bonferroni post-hoc test for pH, NH+4 content, and NO-3 content, and dehydrogenase activity; and Kruskal–Wallis one-way ANOVA with multiple comparisons of mean ranks and Bonferroni adjustment for DW, SOM, ammonification activity, and DMSO reduction).Tabelle 1. Chemische und enzymatische Parameter (n = 3) der Böden S1, S1A, S2, S2A und S3, als Mittelwert (x̅) mit Standardabweichung (SD) dargestellt. Die Buchstaben in Klammern geben Informationen über signifikante Unterschiede zwischen den Böden (p < 0.05, One-way ANOVA mit Bonferroni post-hoc Tests für den pH-Wert, Ammonium- und Nitratgehalt und für die Dehydrogenaseaktivität und Kruskal-Wallis One-way ANOVA mit multiple Mittelwertvergleiche und Bonferroni Korrektur für das Trockengewicht, den Gehalt an organischer Substanz, für die Ammonifikation und DMSO- Reduktion).

Soil		DW (%)	SOM (%)	pH	Ammonium (μg NH4+−N g−1 DW)$\begin{align} & (\mu \text{g NH}_{4}^{+}-\text{N}\ {{\text{g}}^{-1}} \\ & \ \ \ \ \ \ \text{DW)} \\ \end{align}$	Nitrate (μg NO3−N g−1 DW)$\begin{align} & (\mu \text{g N}{{\text{O}}_{3}}-\text{N}\ {{\text{g}}^{-1}} \\ & \ \ \ \ \ \ \text{DW)} \\ \end{align}$	Dehydrogenase (μg TPF g−1DW h−1)$\left( \mu \text{g TPF}\ {{\text{g}}^{-1}}\text{DW}\,{{\text{h}}^{-1}} \right)$activity	Ammonification activity (μg NH4+-N g−1 DW d−1)$\begin{align} & (\text{ }\!\!\mu\!\!\text{ g}\ \text{NH}_{4}^{+}\text{-N}\ {{\text{g}}^{-1}} \\ & \ \ \ \ \text{DW}\ {{\text{d}}^{-1}}) \\ \end{align}$	DMSO reduction (μg DMS g−1 DW h−1)$\begin{align} & (\text{ }\!\!\mu\!\!\text{ g}\ \text{DMS }{{\text{g}}^{-1}} \\ & \ \ \ \ \text{DW}\ {{\text{h}}^{-1}}) \\ \end{align}$
S1	x̅	93.8 (a)	0.99 (a)	7.1 (d)	2.30 (a)	4.97 (a)	0.90 (a)	0.75 (a)	0.47 (a)
(6 years)	SD	±0.02	±0.054	±0.04	±0.070	±0.107	±0.247	±0.307	±0.020
S 1A	x̅	90.1 (ab)	1.71 (ab)	7.0 (c)	2.46 (a)	18.80 (b)	2.34 (b)	4.57 (ab)	2.31 (a)
(35 years)	SD	±0.13	±0.089	±0.04	±0.108	±2.120	±0.374	±0.662	±0.230
S2	x̅	84.2 (ab)	4.98 (ab)	6.9 (b)	3.98 (b)	29.00 (c)	8.90 (d)	7.83 (ab)	6.50 (a)
(80 years)	SD	±0.05	±0.170	±0.02	±0.258	±1.393	±0.231	±3.177	±0.424
S2A	x̅	81.3 (ab)	5.83 (ab)	6.8 (b)	4.06 (b)	38.80 (d)	6.10 (c)	5.15 (ab)	5.81 (a)
(150 years)	SD	±0.25	±0.019	±0.02	±0.266	±2.658	±0.449	±1.624	±0.448
S3	x̅	75.0 (b)	11.09 (b)	5.5 (a)	9.72 (c)	22.47 (b)	8.00 (d)	12.00 (b)	8.22 (a)
(>5000 years)	SD	±0.42	±0.311	±0.04	±0.134	±1.497	±0.309	±0.968	±2.780

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Die Bodenkultur: Journal of Land Management, Food and Environment

Potential methane production and oxidation along the soil chronosequence of the Rotmoos glacier forefield

Eva Maria Prem,
Eva Maria Prem,
Nadine Praeg,
Nadine Praeg,
Katrin Hofmann,
Katrin Hofmann,
Andreas Otto Wagner and
Andreas Otto Wagner and
Paul Illmer
Paul Illmer

Published Online: 11 Jun 2019

Volume & Issue: Volume 70 (2019) - Issue 1 (March 2019)

Page range: 19 - 31

Received: 20 Sep 2018

Accepted: 16 Jan 2019

Journal & Issue Details

Die Bodenkultur: Journal of Land Management, Food and Environment

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References

Recent Articles

Die Bodenkultur: Journal of Land Management, Food and Environment

Potential methane production and oxidation along the soil chronosequence of the Rotmoos glacier forefield

Eva Maria Prem,Eva Maria Prem,Nadine Praeg,Nadine Praeg,Katrin Hofmann,Katrin Hofmann,Andreas Otto Wagner andAndreas Otto Wagner andPaul IllmerPaul Illmer

Published Online: 11 Jun 2019

Volume & Issue: Volume 70 (2019) - Issue 1 (March 2019)

Page range: 19 - 31

Received: 20 Sep 2018

Accepted: 16 Jan 2019

Journal & Issue Details

Die Bodenkultur: Journal of Land Management, Food and Environment

PDF Preview

Article

Figure 1

Figure 2

Figure 3

Figure 4

Figures & Tables

Figure 1

Figure 2

Figure 3

Figure 4

References

Recent Articles

Eva Maria Prem,
Eva Maria Prem,
Nadine Praeg,
Nadine Praeg,
Katrin Hofmann,
Katrin Hofmann,
Andreas Otto Wagner and
Andreas Otto Wagner and
Paul Illmer
Paul Illmer