There is a growing demand for probiotics, which are very common in therapeutic, prophylactic, and growth supplements in animal and human health (Pandiyan et al. 2013). Probiotics have recently gained popularity as candidates for beneficial microbes in cultured organisms to maintain the health and well-being of different aquatic organisms (Dawood et al. 2019). Of the many probiotics that have been discovered,
The coding contents, bacterial strains, and Genbank numbers used in the study are presented in Table 1.
Results of sequences
Treatment code | Strains | Identification results | Genbank Numbers |
---|---|---|---|
A | FD-1 | MW847612 | |
B | FDG-37 | MW740242 | |
C | FD-48 | MW751888 | |
D | TV-17C | MW751910 |
A total of 3700 rainbow trout (
Design of primers: The 16S-23S rDNA region was expressed using universal primers (Jiang et al. 2006). The universal primer pairs used for this are provided in Table 2. DNA isolation: Isolation was performed using the Qiagen Qiacube DNA Isolation Robot with the aid of the Qiamp DNA Mini Qiacube Kit. Colonies were homogenized in PBS solution for 2 min and then centrifuged at 5000 g for 10 min to obtain a bacterial pellet. After the isolation step of the tube containing the bacterial pellet was completed in the Qiacube device, 1.5 ml volume tubes collected from the L3 position and stored at –20°C until the PCR analysis following the relevant labeling process.
Sequences of primers
Primer | Primer Sequence (5’-3’) |
---|---|
27 Forward | AGAGTTTGATCCTGGCTCAG |
1492 Reverse | GGTTACCTTGTTACGACTT |
The PCR reaction mixture and the reaction cycle are presented in Table 3. PCR products were visualized on 1% agarose gel (1 g agarose, 100 ml TAE, 4 μl ethidium bromide, 10 mg ml-1). PCR products were loaded onto the frozen gel and run at 90V for 50 min. Purification was performed with a commercially available PCR purification kit (Invitrogen). The purified sample was obtained using sequencing service from Refgen Biotechnology Company (Turkey, Ankara). The sequenced samples were analyzed using the Bioedit software.
PCR mix content and cycle conditions
PCR Mix | Amount | PCR Cycle | |||
---|---|---|---|---|---|
dH2O | 37.2 μl | 1 | 95°C | 2 min | 1 cycle |
10X PZR tampon | 5 μl | 2 | 94°C | 1 min | |
MgCl2 | 3 μl | 3 | 53°C | 1 min | 35 cycle |
dNTP mix | 0.7 μl | 4 | 72°C | 1.30 min | |
Forward primer | 0.8 μl | 5 | 72°C | 10 min | 1 cycle |
Reverse primer | 0.8 μl | 6 | 4°C | ∞ | |
DNA | 2 μl | ||||
Taq Polymerase (250 U) | 0.5 μl | ||||
Total | 50 μl |
For bacterial growth, dilution tubes were prepared separately for each bacterium. With gentle stirring, 100 μl of the solution was transferred onto nutrient agar (NA) and then inoculation was carried out on six Petri dishes. The seeded Petri dishes were left to incubate at 30°C in aerobic conditions for 48 h. Purification was performed from samples in which individual colonies were observed on Petri dishes. They were stored at –86°C in stock media containing Loria Broth (LB) and 18% glycerol until diagnosis and characterization processes (Kara et al. 2021). Frozen bacterial cultures (
Experimental design
Treatment code | Strains |
---|---|
A | FD-1 |
B | FDG-37 |
C | FD-48 |
D | TV-17C |
E | No bacteria |
In the experimental setup, pure bacteria to be tested were removed from the freezer and transferred into Petri dishes containing the NA medium, and then incubated for 24 h at 30°C to obtain fresh cultures. When transferring them to the nutrient medium containing 250 ml of NB, isolate numbers of bacteria were recorded on each of these cultures. The absorbance of these cultures, grown for 24 h in the horizontal shaker incubator, was adjusted to 1 × 10x CFU ml-1 concentration using sterile distilled water in a biological turbidimeter. The experimental design was made based on static tests with four replications. Different doses were used in the experiment. First, limiting pretesting was performed by applying a control to cultured trout of 1.0 × 101, 102, 103, 104, 105 106, 107, and 108 CFU ml-1 for each bacterial species. Then, considering these preliminary test results (LC50 value), the dose to be applied in the main test (1.0 × 107 CFU ml-1) was determined and the experiment was resumed. There were five groups in the tests, one of which was the control and four were the treatments. Bacterial cultures at a concentration of 1 × 107 CFU ml-1 prepared in the experimental setup were applied to each aquarium (based on the 1/1000 inoculation culture ratio). In this application, taking into account the static test procedure, a solution containing 1 ml of bacteria was applied to each 100 ml, which was prepared separately for each bacterial species. Water quality parameters were measured for each application group at the beginning and at the end of the test (Table 5).
Parameters of the trial water
Water quality parameters | Beginning of the treatment (Hour 0) | End of the treatment (Hour 96) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
A | B | C | D | E | A | B | C | D | E | |
Temperature | 8.3 | 8.6 | 8 | 10 | 8.6 | 10.06 | 10.5 | 8.5 | 9.6 | 8.1 |
Oxygen | 8.44 | 9.18 | 9.57 | 7.5 | 9.18 | 5.87 | 4.66 | 9.23 | 6.55 | 9.09 |
EC | 0.220 | 0.222 | 0.215 | 0.217 | 0.222 | 0.237 | 0.237 | 0.220 | 0.241 | 0.205 |
pH | 8.29 | 8.25 | 8.34 | 8.30 | 8.25 | 7.84 | 7.96 | 8.28 | 8.02 | 8.09 |
The LC50 value was calculated by Probit Analysis using Microsoft Excel software. For this purpose, rainbow trout were exposed to different bacteria. After 24 h, dead fish were detected and Probit analysis was performed. The data yielded an S-shaped curve, thus the LC value was calculated by converting doses into log10 to make this curve linear (Köktürk et al. 2021).
Swimming performance was determined using a specific system. In this system, the temperature in the swimming tunnel was 10.0 ± 0.5°C and the oxygen level was 10.0 ± 0.5 ppm. The critical swimming speed (Ucrit) was calculated according to the equation given by Brett (1964). Swimming performance tests were carried out and the Ucrit was calculated using the said formula (Plaut 2001; Topal et al. 2015).
Ucrit = Uf + (tf/ti)Ui, where
Erythrocyte count (RBC), leukocyte count (WBC), hemoglobin value (Hb), hematocrit ratio (Hct), platelet count (PLT), hemoglobin count per erythrocyte (MCHC), mean hemoglobin amount per erythrocyte (MCH) and mean erythrocyte volume (MCV) were determined in blood samples (Ucar and Atamanalp 2010; Parlak and Atamanalp 2017). Blood from fish was collected from the caudal vein. The cyanmethemoglobin method was used to determine hemoglobin and the microhematocrit method was used to determine hematocrit. For the determination of erythrocyte, leukocyte and thrombocyte levels, countings were made on areas determined under a microscope on a Thoma slide after staining with Dacie’s solution. Values of other indices – mean erythrocyte volume (MCV), mean cell hemoglobin (MCH), and hemoglobin per erythrocyte (MCHC) – were calculated using the formulas provided by Parlak and Atamanalp (2017). To determine the erythrocyte sedimentation rate, anticoagulant blood samples were collected into hematocrit tubes (1.1 mm in diameter and 7 cm in length) and kept in an upright position (90°) for 1 h. The separated serum part was measured using a ruler and recorded in mm/h (Ucar and Atamanalp, 2010).
Tissue samples (brain, gill, and liver) collected from fish were homogenized in a homogenizer after adding the KH2PO4 buffer solution three times. The obtained homogenates were centrifuged at 4°C depending on the tissue type and the supernatants were used to measure enzyme activities (Alak et al. 2020a). The AChE activity and MDA content in brain homogenates, and antioxidant defense indicators (SOD, CAT, GPx, GR, GST, G6PD activity or MDA content) in gill and liver homogenates were determined. Protein concentration was determined spectrophotometrically at 595 nm according to the Bradford method (using bovine serum albumin as standard; Bradford 1976).
The enzyme activity was determined by absorbance readings at a wavelength of 412 nm according to the method of Ellman et al. (1961) as described by Alak et al. (2019).
Xanthine produces a superoxide radical through the xanthine oxidase system. If there is no SOD in the environment, the superoxide radical reduces NBT (nitro-blue tetrazolium) and a blue color is produced. Removal of superoxide radicals from the environment and inhibition of NBT reduction causes a decrease in the intensity of the blue color depending on the amount of SOD in the environment. The produced superoxide radicals react with NBT, while SOD in the sample dismutates the produced radicals and slows down the NBT reduction reaction, and reduces the absorbance readings by forming absorbance formazan (Sun et al. 1988). Based on this principle, SOD activity was determined spectrophotometrically at 560 nm (Alak et al. 2020b).
The Aebi (1974) method was used to determine the catalase activity. It is based on the principle of measuring the decrease in absorbance at 240 nm when H2O2 in the activity measurement medium is converted to H2O via CAT. The reaction was determined by measurements made at 240 nm in a spectrophotometer and the rate of decrease in the amount of absorbance was associated with catalase activity.
GPx activity was determined according to Beutler (1984). It was calculated by measuring the difference in absorbance at 340 nm during the oxidation of NADPH consumed during the conversion of GSSG, which is formed as a result of the oxidation of GSH with H2O2 to GSH upon glutathione reductase (GSSG-Rd) catalysis, in a reaction catalyzed by GSH-Px (Atamanalp et al. 2021).
The activity measurement is based on the absorbance at 340 nm of CDNB conjugated with glutathione at 37°C in a CDNB-containing medium. In all measurements, the amount of conjugate formed by the spontaneous reaction (nonenzymatic) was subtracted from the values obtained by the enzymatic reaction. In the absence of GSH, CDNB rapidly inactivates glutathione S-transferase. For this reason, the reaction was initiated by adding CDNB to the enzyme equilibrated with GSH at 37°C in reaction buffer (Habig et al. 1974).
Enzyme activity is measured by detecting the difference in absorbance by NADPH formed during the reaction at a wavelength of 340 nm per unit time (Beutler 1975).
MDA is an essential product of membrane lipid peroxidation and is a well-known indicator that reflects the degree of oxidative stress in cells (Chen et al. 2021). TCA was added to the extracted tissue samples and incubated at –20°C. The readings were made at 532 nm and the MDA level was calculated according to Atamanalp et al. (2021).
To ensure the correct interpretation of the results, including non-parametric and parametric tests obtained at the end of the study period, the normal distribution test was applied to the data using SPSS V25 software package. Data with normal distribution were subjected to the variance analysis and the significance level was set at 0.05.
Diagnostic results according to the 16S-23S rDNA gene sequences of the bacteria used in this research are presented in Table 1.
The LC50 value for each of the four bacteria was tested in rainbow trout at eight different concentrations (1.0 × 101, 102, 103, 104, 105 106, 107, and 108 CFU ml-1). In these applications, only the second bacteria (B) died at a concentration of 108 CFU ml-1 at the end of the 24th hour (72%). No death was observed in the three other bacterial groups. From the obtained results, the LC50 24 value for B was recorded as 108 CFU ml-1 (mortality rate of 72%), and for the other bacterial species it was > 108 CFU ml-1.
The highest swimming performance was determined in group A (6.4 ± 0.14 BL s-1), while the lowest in group B (6.4 ± 0.14 BL s-1). Statistical analysis showed no significant differences in the application groups at the p < 0.05 level (Fig. 1).
Figure 1
Results of critical swimming performance

Changes in acetylcholinesterase activity were significant at the p < 0.05 level, and the highest inhibition was determined in group B (
Figure 2
Results of AChE enzyme activity in brain

In terms of hematological indices, the difference between the groups was statistically significant (p < 0.05). No statistical difference was observed in RBC, ESR, and MCH between the treatment groups (Table 6).
Hematological indices in the groups
Treatment | WBC (104 mm3) | RBC (106 mm3) | PLT (104 mm3) | ESR (mm h-1) | Hb (g dl-1) | Hct (%) | MCV (μm3) | MCH (pg) | MCHC (g 100ml-1) |
---|---|---|---|---|---|---|---|---|---|
A | 10.65 ± 2.03c | 3.07 ± 0.05a | 14.33 ± 2.16b | 0.18 ± 0.04a | 8.59 ± 0.8ab | 33.50 ± 5.57b | 117.07 ± 13.10b | 29.21 ± 3.91 a | 27.30 ± 3.06 a |
B | 17.98 ± 2.03a | 3.42 ± 0.05a | 23.92 ± 2.16 a | 0.13 ± 0.04a | 9.47 ± 0.8 a | 47.58 ± 5.57 a | 142.78 ± 13.10ab | 28.64 ± 3.91 a | 20.58 ± 3.06b |
C | 14.73 ± 2.03b | 3.33 ± 0.05a | 22.07 ± 2.16 a | 0.16 ± 0.04 a | 7.41 ± 0.8b | 44.25 ± 5.57 a | 136.06 ± 13.10ab | 22.82 ± 3.91 a | 17.11 ± 3.06b |
D | 12.91 ± 2.03bc | 3.15 ± 0.05a | 16.00 ± 2.16b | 0.26 ± 0.04 a | 8.07 ± 0.8ab | 52.56 ± 5.57 a | 168.99 ± 13.10 a | 26.44 ± 3.91 a | 16.19 ± 3.06b |
E | 15.00 ± 2.03b | 3.40 ± 0.05a | 22.92 ± 2.16a | 0.23 ± 0.04 a | 8.10 ± 0.8ab | 47.50 ± 5.57 a | 141.13 ± 13.10ab | 24.33 ± 3.91 a | 17.15 ± 3.06b |
–
–
–
–
– control (n = 25, mean ± standard error). Different letters (a, b) indicate significant differences between the same columns within each experimental treatment group
It was determined that different bacterial species (tested in this research) significantly increased antioxidant capacity in liver and gill tissues compared to the control group (p < 0.05, Table 7). Considering the lipid peroxidation level, it was determined that
Oxidative stress response of gill and liver tissues in the groups
Tissues | Treatment | Oxidative stress response | ||||||
---|---|---|---|---|---|---|---|---|
CAT (EU mg-1) | SOD (EU mg-1) | GR (EU mg-1) | GST (EU mg-1) | G6PD (EU mg-1) | GPx (EU mg-1) | MDA (nmol protein-1) | ||
A | 0.98 ± 0.03b | 0.24 ± 0.03bb | 0.39 ± 0.08 bb | 0.22 ± 0.04 a | 0.26 ± 0.03 a | 0.49 ± 0.02 b | 3.30 ± 0.03 bb | |
B | 0.43 ± 0.03b | 0.20 ± 0.03 bb | 0.38 ± 0.08 bb | 0.19 ± 0.04 a | 0.05 ± 0.03 b | 0.26 ± 0.02 b | 3.79 ± 0.03 a | |
Gill | C | 2.44 ± 0.03a | 0.29 ± 0.03a | 0.65 ± 0.08a | 0.30 ± 0.04 a | 0.26 ± 0.03 a | 1.45 ± 0.02 a | 2.33 ± 0.03 b |
D | 2.40 ± 0.03a | 0.28 ± 0.03 a | 0.39 ± 0.08 bb | 0.28 ± 0.04 a | 0.38 ± 0.03 a | 0.61 ± 0.02 bb | 2.52 ± 0.03 bb | |
E | 0.55 ± 0.03 b | 0.15 ± 0.03 b | 0.34 ± 0.08b | 0.22 ± 0.04 a | 0.05 ± 0.03 b | 0.69 ± 0.02 bb | 2.64 ± 0.03 bb | |
A | 1.83 ± 0.02bb | 0.27 ± 0.04bc | 0.51 ± 0.02 a | 0.22 ± 0.02 bb | 0.17 ± 0.02 b | 1.19 ± 0.01 bb | 0.57 ± 0.03 bb | |
B | 0.39 ± 0.02 b | 0.18 ± 0.04cd | 0.27 ± 0.02 a | 0.16 ± 0.02 bb | 0.14 ± 0.02 b | 0.25 ± 0.01 b | 0.76 ± 0.03 bb | |
Liver | C | 4.49 ± 0.02a | 0.43 ± 0.04 a | 0.54 ± 0.02 a | 0.33 ± 0.02 a | 0.78 ± 0.02 a | 2.03 ± 0.01 a | 0.05 ± 0.03 b |
D | 3.13 ± 0.02bb | 0.34 ± 0.04 bb | 0.45 ± 0.02 a | 0.24 ± 0.02bb | 0.40 ± 0.02 b | 0.88 ± 0.01 b | 0.24 ± 0.03 b | |
E | 0.25 ± 0.02 b | 0.13 ± 0.04d | 0.18 ± 0.02 a | 0.11 ± 0.02 b | 0.09 ± 0.02 b | 0.26 ± 0.01 b | 1.16 ± 0.03 a |
–
–
–
–
– control (n = 25, mean ± standard error). Different letters (a, b) indicate significant differences between the same columns within each experimental treatment group
The well-being and growth of organisms are directly dependent on their environment. Optimal properties and physicochemical status of water are important determinants in aquaculture. Exposure to different substances causes damage to the gills, difficulty in breathing, decreased oxygen uptake, and a decrease in critical swimming speed as a behavioral effect. The host gut microbiota affects the central nervous system by affecting local oxidative stress levels and the permeability of the gut, then subsequently the behavioral characteristics of the host (Chen et al. 2021). In this research, we observed that acute applications of bacterial strains significantly reduce the critical swimming speed, especially in group B. AChE inhibition is believed to be effective in this poor performance (Domingues et al. 2016). This reduction can be considered effective in possible changes in the gills. We believe that these behavioral changes are due to the association of deleterious effects between cerebral ROS and neurotransmission disorder. This is because its downregulation causes neuron depolarization and decreases neural activity, which has negative consequences on behavioral functions, including locomotor modification (Pereira et al. 2002). The non-specific response in fish is triggered by physical, chemical, and perceived stressors and enables fish to cope with the stressor. It is important to relate cellular responses to behavior, chemical stress, and higher levels of biological organization. Because behavior is the result of internal and external processes, changes in such parameters help to understand the health and viability of natural populations exposed to pollutants. Stressors induce a nonspecific response in fish to adapt to or cope with the disturbance (Sharma 2018). Under stress conditions, along with the physiological effect of the primary response of aquatic organisms, secondary responses occur in a chain-like manner. Secondary responses can be determined by changes in histological, histopathological, biochemical, and hematological parameters. Homeostasis in fish after stress can be achieved through certain physiological changes that regulate hematological, hormonal, and energy metabolism (Uçar et al. 2021). Some studies have reported that probiotic supplementation can increase hematological indices in fish (Hassaan et al. 2021; Jahan et al. 2021). Previous studies have documented that
The data obtained in this study for the four bacterial species showed that they support the antioxidant defense system, have positive effects on hematological indices, and positively affect the swimming performance of rainbow trout, except for group B. The best results were obtained from
Figure 1

Figure 2

Sequences of primers
Primer | Primer Sequence (5’-3’) |
---|---|
27 Forward | AGAGTTTGATCCTGGCTCAG |
1492 Reverse | GGTTACCTTGTTACGACTT |
Parameters of the trial water
Water quality parameters | Beginning of the treatment (Hour 0) | End of the treatment (Hour 96) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
A | B | C | D | E | A | B | C | D | E | |
Temperature | 8.3 | 8.6 | 8 | 10 | 8.6 | 10.06 | 10.5 | 8.5 | 9.6 | 8.1 |
Oxygen | 8.44 | 9.18 | 9.57 | 7.5 | 9.18 | 5.87 | 4.66 | 9.23 | 6.55 | 9.09 |
EC | 0.220 | 0.222 | 0.215 | 0.217 | 0.222 | 0.237 | 0.237 | 0.220 | 0.241 | 0.205 |
pH | 8.29 | 8.25 | 8.34 | 8.30 | 8.25 | 7.84 | 7.96 | 8.28 | 8.02 | 8.09 |
Hematological indices in the groups
Treatment | WBC (104 mm3) | RBC (106 mm3) | PLT (104 mm3) | ESR (mm h-1) | Hb (g dl-1) | Hct (%) | MCV (μm3) | MCH (pg) | MCHC (g 100ml-1) |
---|---|---|---|---|---|---|---|---|---|
A | 10.65 ± 2.03 |
3.07 ± 0.05 |
14.33 ± 2.16 |
0.18 ± 0.04 |
8.59 ± 0.8 |
33.50 ± 5.57 |
117.07 ± 13.10 |
29.21 ± 3.91 |
27.30 ± 3.06 |
B | 17.98 ± 2.03 |
3.42 ± 0.05 |
23.92 ± 2.16 |
0.13 ± 0.04 |
9.47 ± 0.8 |
47.58 ± 5.57 |
142.78 ± 13.10 |
28.64 ± 3.91 |
20.58 ± 3.06 |
C | 14.73 ± 2.03 |
3.33 ± 0.05 |
22.07 ± 2.16 |
0.16 ± 0.04 |
7.41 ± 0.8 |
44.25 ± 5.57 |
136.06 ± 13.10 |
22.82 ± 3.91 |
17.11 ± 3.06 |
D | 12.91 ± 2.03bc | 3.15 ± 0.05 |
16.00 ± 2.16 |
0.26 ± 0.04 |
8.07 ± 0.8 |
52.56 ± 5.57 |
168.99 ± 13.10 |
26.44 ± 3.91 |
16.19 ± 3.06 |
E | 15.00 ± 2.03 |
3.40 ± 0.05 |
22.92 ± 2.16 |
0.23 ± 0.04 |
8.10 ± 0.8 |
47.50 ± 5.57 |
141.13 ± 13.10 |
24.33 ± 3.91 |
17.15 ± 3.06 |
Oxidative stress response of gill and liver tissues in the groups
Tissues | Treatment | Oxidative stress response | ||||||
---|---|---|---|---|---|---|---|---|
CAT (EU mg-1) | SOD (EU mg-1) | GR (EU mg-1) | GST (EU mg-1) | G6PD (EU mg-1) | GPx (EU mg-1) | MDA (nmol protein-1) | ||
A | 0.98 ± 0.03 |
0.24 ± 0.03 |
0.39 ± 0.08 |
0.22 ± 0.04 |
0.26 ± 0.03 |
0.49 ± 0.02 |
3.30 ± 0.03 |
|
B | 0.43 ± 0.03 |
0.20 ± 0.03 |
0.38 ± 0.08 |
0.19 ± 0.04 |
0.05 ± 0.03 |
0.26 ± 0.02 |
3.79 ± 0.03 |
|
Gill | C | 2.44 ± 0.03 |
0.29 ± 0.03 |
0.65 ± 0.08 |
0.30 ± 0.04 |
0.26 ± 0.03 |
1.45 ± 0.02 |
2.33 ± 0.03 |
D | 2.40 ± 0.03 |
0.28 ± 0.03 |
0.39 ± 0.08 |
0.28 ± 0.04 |
0.38 ± 0.03 |
0.61 ± 0.02 |
2.52 ± 0.03 |
|
E | 0.55 ± 0.03 |
0.15 ± 0.03 |
0.34 ± 0.08 |
0.22 ± 0.04 |
0.05 ± 0.03 |
0.69 ± 0.02 |
2.64 ± 0.03 |
|
A | 1.83 ± 0.02 |
0.27 ± 0.04bc | 0.51 ± 0.02 |
0.22 ± 0.02 |
0.17 ± 0.02 |
1.19 ± 0.01 |
0.57 ± 0.03 |
|
B | 0.39 ± 0.02 |
0.18 ± 0.04cd | 0.27 ± 0.02 |
0.16 ± 0.02 |
0.14 ± 0.02 |
0.25 ± 0.01 |
0.76 ± 0.03 |
|
Liver | C | 4.49 ± 0.02 |
0.43 ± 0.04 |
0.54 ± 0.02 |
0.33 ± 0.02 |
0.78 ± 0.02 |
2.03 ± 0.01 |
0.05 ± 0.03 |
D | 3.13 ± 0.02 |
0.34 ± 0.04 |
0.45 ± 0.02 |
0.24 ± 0.02 |
0.40 ± 0.02 |
0.88 ± 0.01 |
0.24 ± 0.03 |
|
E | 0.25 ± 0.02 |
0.13 ± 0.04 |
0.18 ± 0.02 |
0.11 ± 0.02 |
0.09 ± 0.02 |
0.26 ± 0.01 |
1.16 ± 0.03 |
PCR mix content and cycle conditions
PCR Mix | Amount | PCR Cycle | |||
---|---|---|---|---|---|
dH2O | 37.2 μl | 1 | 95°C | 2 min | 1 cycle |
10X PZR tampon | 5 μl | 2 | 94°C | 1 min | |
MgCl2 | 3 μl | 3 | 53°C | 1 min | 35 cycle |
dNTP mix | 0.7 μl | 4 | 72°C | 1.30 min | |
Forward primer | 0.8 μl | 5 | 72°C | 10 min | 1 cycle |
Reverse primer | 0.8 μl | 6 | 4°C | ∞ | |
DNA | 2 μl | ||||
Taq Polymerase (250 U) | 0.5 μl | ||||
Total | 50 μl |
Experimental design
Treatment code | Strains |
---|---|
A | FD-1 |
B | FDG-37 |
C | FD-48 |
D | TV-17C |
E | No bacteria |
Results of sequences
Treatment code | Strains | Identification results | Genbank Numbers |
---|---|---|---|
A | FD-1 | MW847612 | |
B | FDG-37 | MW740242 | |
C | FD-48 | MW751888 | |
D | TV-17C | MW751910 |
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